Statistics of Swiss National League A in the 1998-1999 football season.
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It was contested by 12 teams, and Servette FC won the championship.
| Pos | Club | P | W | D | L | GF | GA | Pts |
| 1 | Servette FC | 22 | 12 | 8 | 2 | 38 | 24 | 44 |
| 2 | Grasshopper-Club Zürich | 22 | 11 | 5 | 6 | 37 | 25 | 38 |
| 3 | FC Zürich | 22 | 10 | 8 | 4 | 33 | 21 | 38 |
| 4 | Lausanne Sports | 22 | 10 | 8 | 4 | 36 | 33 | 38 |
| 5 | Neuchâtel Xamax | 22 | 7 | 11 | 4 | 30 | 23 | 32 |
| 6 | FC Basel | 22 | 8 | 4 | 10 | 21 | 34 | 28 |
| 7 | FC Lucerne | 22 | 6 | 9 | 7 | 26 | 25 | 27 |
| 8 | FC St. Gallen | 22 | 7 | 6 | 9 | 31 | 31 | 27 |
| 9 | FC Sion | 22 | 5 | 8 | 9 | 22 | 36 | 23 |
| 10 | AC Lugano | 22 | 5 | 7 | 10 | 35 | 43 | 22 |
| 11 | BSC Young Boys | 22 | 4 | 7 | 11 | 33 | 34 | 19 |
| 12 | FC Aarau | 22 | 3 | 7 | 12 | 28 | 41 | 16 |
| Pos | Club | P | W | D | L | GF | GA | Pts |
| 1 | Servette FC | 14 | 7 | 3 | 4 | 19 | 14 | 46(22) |
| 2 | Grasshopper-Club Zürich | 14 | 8 | 3 | 3 | 31 | 11 | 46(19) |
| 3 | Lausanne Sports | 14 | 8 | 2 | 4 | 28 | 20 | 45(19) |
| 4 | FC Zürich | 14 | 7 | 2 | 5 | 24 | 15 | 42(19) |
| 5 | FC Basel | 14 | 5 | 4 | 5 | 18 | 19 | 33(14) |
| 6 | Neuchâtel Xamax | 14 | 2 | 6 | 6 | 12 | 27 | 28(16) |
| 7 | FC Lucerne | 14 | 4 | 2 | 8 | 13 | 27 | 28(14) |
| 8 | FC St. Gallen | 14 | 2 | 4 | 8 | 13 | 25 | 24(14) |
| Pos | Club | P | W | D | L | GF | GA | Pts |
| 1 | AC Lugano | 14 | 9 | 2 | 3 | 19 | 10 | 29 |
| 2 | SR Delémont | 14 | 7 | 2 | 5 | 23 | 20 | 23 |
| 3 | Yverdon-Sport FC | 14 | 6 | 3 | 5 | 22 | 17 | 21 |
| 4 | FC Aarau | 14 | 6 | 2 | 6 | 24 | 24 | 20 |
| 5 | FC Sion | 14 | 6 | 1 | 7 | 16 | 17 | 19 |
| 6 | BSC Young Boys | 14 | 5 | 2 | 7 | 25 | 31 | 17 |
| 7 | FC Wil | 14 | 5 | 1 | 8 | 26 | 30 | 16 |
| 8 | Étoile Carouge FC | 14 | 4 | 3 | 7 | 18 | 24 | 15 |
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